Title — manhattan_plot_per_area • semseeker

Title

manhattan_plot_per_area(
  marker,
  figure,
  group,
  subgroup,
  family,
  adjust_method,
  phenotype,
  only_significant_areas = FALSE
)

Arguments

marker: investigated marker eg. MUTATIONS, DELTAR, DELTAQ
figure: HYPO, HYPER
group: genomic area (eg. GENE, ISLAND, DMR)
subgroup: sub genomic area (TSS1550), depending on the genomic area
family: fullname of the family used for the association analysis
adjust_method: colnames of the pvalue adjusted to use
phenotype: variable to select from the sample_sheet to use for coloring point
only_significant_areas: TRUE if filter for pvalue < 0.05