Title manhattan_plot_marker_per_probe

manhattan_plot_marker_per_probe(
  probe_name_max = "cg11680158",
  probe_name_min = "cg11680158",
  max_sample = 0,
  min_sample = 0,
  min_signal_probe = 0,
  label_font_size = 3,
  hyper_color = "blue",
  hypo_color = "orange",
  non_outlier_color = "grey",
  limit_label_color = "blue",
  limit_line_color = "red",
  limit_line_color_median = "black",
  reference_samples_color = "cyan",
  show_labels = TRUE,
  result_folder = result_folder,
  maxResources = maxResources,
  parallel_strategy = parallel_strategy,
  ...
)

Arguments

probe_name_max: cg name of the probe to represent tyh probe with maximum burden
probe_name_min: cg name of the probe to represent tyh probe with miniumal burden
max_sample: max number of samples to plot
min_sample: min number of samples to plot
min_signal_probe: min signal value of the probe to be plotted
label_font_size: size of the labels
hyper_color: color to assign to hypermethylated probes
hypo_color: color to assign to hypomethylated probes
non_outlier_color: color to assign to probes that are not outliers
limit_label_color: color to assign to the labels of the limit lines
limit_line_color: color to assign to the limit lines
limit_line_color_median: color to assign to the median limit line
reference_samples_color: color to assign to the reference samples
show_labels: show labels in the plot
result_folder: foder where the results are stored
maxResources: percentage of max system's resource to use
parallel_strategy: strategy to use for parallelization
...: other parameter