Calculate stochastic epi mutations from a methylation dataset as outcome report of pivot

Calculate stochastic epi mutations from a methylation dataset as outcome report of pivot

analyze_population(
  signal_data,
  sample_sheet,
  signal_thresholds,
  probe_features
)

Arguments

signal_data

whole matrix of data to analyze.

sample_sheet

name of samplesheet's column to use as control population selector followed by selection value,

signal_thresholds

thresholds defined to calculate epimutations

probe_features

probe_features detail from 27 to EPIC illumina dataset

Value

files into the result folder with pivot table and bedgraph.